North West Genomics Testing Workflow (GTW)
0.0.1 - ci-build  flag

DRAFT Implementation Guide

This is for collaboration and discussion purposes and is subject to change.

North West Genomics Testing Workflow (GTW) - Local Development build (v0.0.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Order Results Management [LAB-3]

Referenced Standards

Scope

It transmits the observation results from the Order Filler to the Order Result Tracker, when a result is acquired, clinically validated, modified or deleted at the Order Filler level.

EIP - Document Message

Actor Roles

Regional Order Results management [LAB-3]Order Filler Genomic Laboratory Hub (GLH) LIMSIntermediary NW GLH Regional Integration Engine (RIE)Order Result TrackerHL7 v2 MessageORU_R01HL7 v2 MessageORU_R01HL7 FHIR MessageLaboratory Result O21(un)structured(or structured report)(un)structured(or compositionHL7 EU Laboratory Report)

Regional Order Results management [LAB-3] Component Diagram


Message

The following messages are used to support creation and updating of the Genomics Test Report composition

Message Purpose EIP Type
Laboratory Results The results for a laboratory-order request. Document Message

Laboratory Results

Is based on a HL7 FHIR unsolicited-observation (R01) Message which is backwards compatible with HL7 v2 ORU_R01 Message.

Detailed Mapping can be here Message ORU_R01 to Bundle Map (Experimental)

HL7 v2 ORU Segment Cardinality FHIR Resource Map  
MSH - Message Header 1..1 MessageHeader MSH[MessageHeader]  
PID - Patient Identification 0..1 Patient PID[Patient]  
PV1 - Patient visit 0..1 Encounter PV1[Encounter]  
ORC - Common Order 1..* DiagnosticReport ORC[DiagnosticReport]  
    ServiceRequest ORC[ServiceRequest]  
OBR - Observations Request   DiagnosticReport OBR[DiagnosticReport]  
NTE - Notes and Comments   Observation.note?    
OBX - Observation/Result   Observation or Attachment (part of DiagnosticReport) OBX[Observation]  
Order FillerIntermediaryNW GLH Regional Integration Engine (RIE)Order Result TrackerPerform TestsWrite Test ReportSend HL7 v2 MessageUnsolicited Observation ORU_R01Validate messagealt[Successful validation]Response HL7 v2 Message AA Application AcceptEither option can carry a compositionHL7 EU Laboratory Reportopt[HL7 FHIR Message]Transform HL7 v2 to FHIR MessageSend HL7 FHIR MessageLaboratory Results R01Response HL7 FHIR Message[HL7 v2 Message]Send HL7 v2 MessageUnsolicited Observation ORU_R01Response HL7 v2 Message[Unsuccessful validation]Response HL7 v2 Message AE Application Error

Regional Order Results management [LAB-3] Sequence Diagram